J5_4U25_019
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4U25|1|DA|A|532, 4U25|1|DA|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U25_019 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1085
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4U25|1|DA|C|531
4U25|1|DA|A|532
4U25|1|DA|G|533
*
4U25|1|DA|C|560
4U25|1|DA|G|561
4U25|1|DA|U|562
4U25|1|DA|A|563
4U25|1|DA|C|564
*
4U25|1|DA|G|577
4U25|1|DA|G|578
4U25|1|DA|G|579
*
4U25|1|DA|C|1261
4U25|1|DA|A|1262
*
4U25|1|DA|U|2017
4U25|1|DA|G|2018
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L32
- Chain DE
- 50S ribosomal protein L4
- Chain DJ
- 50S ribosomal protein L13
- Chain DQ
- 50S ribosomal protein L20
- Chain DR
- 50S ribosomal protein L21
- Chain DS
- 50S ribosomal protein L22
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