3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
4U50|1|8|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4U50_012 not in the Motif Atlas
Homologous match to J5_8P9A_010
Geometric discrepancy: 0.055
The information below is about J5_8P9A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

4U50|1|5|A|20
4U50|1|5|G|21
4U50|1|5|G|22
*
4U50|1|8|C|35
4U50|1|8|G|36
4U50|1|8|A|37
4U50|1|8|U|38
4U50|1|8|G|39
4U50|1|8|A|40
4U50|1|8|A|41
4U50|1|8|G|42
*
4U50|1|8|U|102
4U50|1|8|G|103
4U50|1|8|A|104
4U50|1|8|A|105
4U50|1|8|C|106
4U50|1|8|G|107
*
4U50|1|8|C|115
4U50|1|8|G|116
*
4U50|1|8|C|137
4U50|1|8|A|138
4U50|1|8|U|139

Current chains

Chain 5
25S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain m5
60S ribosomal protein L15-A
Chain n5
60S ribosomal protein L25
Chain o5
60S ribosomal protein L35-A
Chain o7
60S ribosomal protein L37-A
Chain o9
60S ribosomal protein L39

Coloring options:


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