Motif J5_27223.1 Version J5_27223.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6		7		8		9		10	break		11		12		13		14		15		16	break		17		18	break		19		20		21	1-21	2-20	3-4	3-8	4-8	5-6	6-15	7-13	7-15	8-14	9-12	10-11	16-17	18-19
1	J5_4WF9_001	4WF9	0.2288	1	X	LSU rRNA	A	178	A	179	G	180	*	C	47	A	48	A	49	G	51	A	52	A	53	G	54	*	C	115	G	116	A	117	A	118	U	119	G	120	*	C	129	A	130	*	U	149	A	150	U	151	ncWW	ncwW	cWW	tsS	ncsS			tSH		ntHH	tHS	cWW	cWW	cWW
2	J5_9DFE_001	9DFE	0.2472	1	1A	LSU rRNA	G	176	G	177	G	178	*	C	47	G	48	A	49	G	51	A	52	A	53	G	54	*	C	116	G	117	A	118	A	119	U	120	G	121	*	C	130	G	131	*	C	148	A	149	C	150	cWW		cWW		ncsS	ncSs	cHW	tSH		tHH	tHS	cWW	cWW	cWW
3	J5_8B0X_004	8B0X	0.2075	1	a	LSU rRNA	A	176	G	177	G	178	*	C	47	G	48	A	49	G	51	A	52	A	53	G	54	*	C	116	G	117	A	118	A	119	U	120	G	121	*	C	130	A	131	*	U	148	A	149	U	150	cWW	ncHW	cWW		ncsS	ncSs	cHW	tSH		tHH	tHS	cWW	cWW	cWW
4	J5_8GLP_001	8GLP	0.0987	1	L5+L8	LSU rRNA + 5.8S rRNA	G	19	U	20	G	21	*	C	35	G	36	A	37	G	39	A	40	A	41	G	42	*	C	101	G	102	A	103	A	104	C	105	G	106	*	C	113	G	114	*	U	136	A	137	C	138	cWW		cWW			ncSs		tSH	ntWW	tHH	tHS	cWW	cWW	cWW
5	J5_8P9A_010	8P9A	0.0000	1	AR+AT	LSU rRNA + 5.8S rRNA	A	20	G	21	G	22	*	C	35	G	36	A	37	G	39	A	40	A	41	G	42	*	U	102	G	103	A	104	A	105	C	106	G	107	*	C	115	G	116	*	C	137	A	138	U	139	cWW	cWW	cWW					tSH	tWW	tHH	tHS	cWW	cWW	cWW
6	J5_8OI5_001	8OI5	0.0479	1	1+4	LSU rRNA + 5.8S rRNA	A	19	G	20	G	21	*	C	35	G	36	A	37	G	39	A	40	A	41	G	42	*	U	102	G	103	A	104	A	105	C	106	G	107	*	C	115	G	116	*	C	137	A	138	U	139	cWW	cWW	cWW		ncsS	ncSs		tSH	ntWW	ntHH	tHS	cWW	cWW	cWW
7	J5_9AXU_001	9AXU	0.0577	1	2+4	LSU rRNA + 5.8S rRNA	A	20	G	21	G	22	*	C	43	G	44	A	45	G	47	A	48	A	49	G	50	*	U	110	G	111	A	112	A	113	C	114	G	115	*	C	123	G	124	*	C	145	A	146	U	147	cWW	cWW	cWW			ncSs		tSH	tWW	tHH	tHS	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGGCGAUGAAGUGAACGCGCAU	3
CAAUGAAGCGAAUGCAUAUAAG	1
CGAUGAAGCGAAUGCGCACGGG	1
CGAUGAAGCGAAUGCAUAUAGG	1
GUGCGAUGAAGCGAACGCGUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGAUGAAGAAC**A	3
GAUGAAGAAUAG	2
AAUGAAGAAUAA	1
UGAUGAAGAAC**A	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (7)
Basepair signature: cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
Heat map statistics: Min 0.05 | Avg 0.15 | Max 0.26

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Coloring options: Nucleotide numbers

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