J5_4U52_012
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 4U52|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U52_012 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.045
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4U52|1|5|A|20
4U52|1|5|G|21
4U52|1|5|G|22
*
4U52|1|8|C|35
4U52|1|8|G|36
4U52|1|8|A|37
4U52|1|8|U|38
4U52|1|8|G|39
4U52|1|8|A|40
4U52|1|8|A|41
4U52|1|8|G|42
*
4U52|1|8|U|102
4U52|1|8|G|103
4U52|1|8|A|104
4U52|1|8|A|105
4U52|1|8|C|106
4U52|1|8|G|107
*
4U52|1|8|C|115
4U52|1|8|G|116
*
4U52|1|8|C|137
4U52|1|8|A|138
4U52|1|8|U|139
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain m5
- 60S ribosomal protein L15-A
- Chain n5
- 60S ribosomal protein L25
- Chain o5
- 60S ribosomal protein L35-A
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
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