J5_4U67_001

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UA*UG

Length

20 nucleotides

Bulged bases

4U67|1|X|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4U67_001 not in the Motif Atlas

Homologous match to J5_7A0S_001

Geometric discrepancy: 0.0907

The information below is about J5_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_75459.1

Basepair signature

cWW-F-cWW-cHW-tSH-cWW-tHH-tHS-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4U67|1|X|C|46
4U67|1|X|G|47
4U67|1|X|A|48
4U67|1|X|U|49
4U67|1|X|G|50
4U67|1|X|A|51
4U67|1|X|A|52
4U67|1|X|G|53
*
4U67|1|X|C|114
4U67|1|X|G|115
4U67|1|X|A|116
4U67|1|X|A|117
4U67|1|X|U|118
4U67|1|X|G|119
*
4U67|1|X|C|128
4U67|1|X|A|129
*
4U67|1|X|U|142
4U67|1|X|A|143
*
4U67|1|X|U|154
4U67|1|X|G|155

Current chains

Chain X

23s RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23