J5_4UG0_009
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
- Length
- 42 nucleotides
- Bulged bases
- 4UG0|1|L5|A|3908, 4UG0|1|L5|A|4394, 4UG0|1|L5|G|4451, 4UG0|1|L5|U|4555, 4UG0|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UG0|1|L5|A|3902
4UG0|1|L5|A|3903
4UG0|1|L5|G|3904
4UG0|1|L5|A|3905
4UG0|1|L5|A|3906
4UG0|1|L5|G|3907
4UG0|1|L5|A|3908
4UG0|1|L5|C|3909
4UG0|1|L5|C|3910
*
4UG0|1|L5|G|4392
4UG0|1|L5|G|4393
4UG0|1|L5|A|4394
4UG0|1|L5|U|4395
4UG0|1|L5|A|4396
4UG0|1|L5|A|4397
4UG0|1|L5|C|4398
4UG0|1|L5|U|4399
4UG0|1|L5|G|4400
*
4UG0|1|L5|C|4444
4UG0|1|L5|U|4445
4UG0|1|L5|U|4446
4UG0|1|L5|C|4447
4UG0|1|L5|G|4448
4UG0|1|L5|A|4449
4UG0|1|L5|U|4450
4UG0|1|L5|G|4451
4UG0|1|L5|U|4452
4UG0|1|L5|C|4453
*
4UG0|1|L5|G|4528
4UG0|1|L5|G|4529
4UG0|1|L5|U|4530
4UG0|1|L5|U|4531
4UG0|1|L5|U|4532
4UG0|1|L5|A|4533
4UG0|1|L5|G|4534
*
4UG0|1|L5|U|4552
4UG0|1|L5|A|4553
4UG0|1|L5|G|4554
4UG0|1|L5|U|4555
4UG0|1|L5|U|4556
4UG0|1|L5|U|4557
4UG0|1|L5|U|4558
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S RIBOSOMAL PROTEIN L8
- Chain LB
- 60S RIBOSOMAL PROTEIN L3
- Chain LC
- 60S RIBOSOMAL PROTEIN L4
- Chain LI
- 60S RIBOSOMAL PROTEIN L10-LIKE
- Chain La
- 60S RIBOSOMAL PROTEIN L27A
- Chain Lb
- 60S RIBOSOMAL PROTEIN L29
Coloring options: