J5_4UG0_010

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUG*CAUGCCGACGGGC*GUGCAUU*ACCUCGGGCCGAU*ACGACC

Length

62 nucleotides

Bulged bases

4UG0|1|S2|U|128, 4UG0|1|S2|C|129, 4UG0|1|S2|G|130, 4UG0|1|S2|C|131, 4UG0|1|S2|U|132, 4UG0|1|S2|C|133, 4UG0|1|S2|C|134, 4UG0|1|S2|U|135, 4UG0|1|S2|C|136, 4UG0|1|S2|U|137, 4UG0|1|S2|C|138, 4UG0|1|S2|C|139, 4UG0|1|S2|C|140, 4UG0|1|S2|C|142, 4UG0|1|S2|U|143, 4UG0|1|S2|G|183, 4UG0|1|S2|U|305, 4UG0|1|S2|C|306, 4UG0|1|S2|G|307, 4UG0|1|S2|G|308, 4UG0|1|S2|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|S2|G|123
4UG0|1|S2|U|124
4UG0|1|S2|C|125
4UG0|1|S2|G|126
4UG0|1|S2|C|127
4UG0|1|S2|U|128
4UG0|1|S2|C|129
4UG0|1|S2|G|130
4UG0|1|S2|C|131
4UG0|1|S2|U|132
4UG0|1|S2|C|133
4UG0|1|S2|C|134
4UG0|1|S2|U|135
4UG0|1|S2|C|136
4UG0|1|S2|U|137
4UG0|1|S2|C|138
4UG0|1|S2|C|139
4UG0|1|S2|C|140
4UG0|1|S2|A|141
4UG0|1|S2|C|142
4UG0|1|S2|U|143
4UG0|1|S2|U|144
4UG0|1|S2|G|145
*
4UG0|1|S2|C|174
4UG0|1|S2|A|175
4UG0|1|S2|U|176
4UG0|1|S2|G|177
4UG0|1|S2|C|178
4UG0|1|S2|C|179
4UG0|1|S2|G|180
4UG0|1|S2|A|181
4UG0|1|S2|C|182
4UG0|1|S2|G|183
4UG0|1|S2|G|184
4UG0|1|S2|G|185
4UG0|1|S2|C|186
*
4UG0|1|S2|G|213
4UG0|1|S2|U|214
4UG0|1|S2|G|215
4UG0|1|S2|C|216
4UG0|1|S2|A|217
4UG0|1|S2|U|218
4UG0|1|S2|U|219
*
4UG0|1|S2|A|302
4UG0|1|S2|C|303
4UG0|1|S2|C|304
4UG0|1|S2|U|305
4UG0|1|S2|C|306
4UG0|1|S2|G|307
4UG0|1|S2|G|308
4UG0|1|S2|G|309
4UG0|1|S2|C|310
4UG0|1|S2|C|311
4UG0|1|S2|G|312
4UG0|1|S2|A|313
4UG0|1|S2|U|314
*
4UG0|1|S2|A|336
4UG0|1|S2|C|337
4UG0|1|S2|G|338
4UG0|1|S2|A|339
4UG0|1|S2|C|340
4UG0|1|S2|C|341

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S RIBOSOMAL PROTEIN L24

Chain SE

40S RIBOSOMAL PROTEIN S4, X ISOFORM

Chain SG

40S RIBOSOMAL PROTEIN S6

Chain SI

40S RIBOSOMAL PROTEIN S8