J5_4UJC_001
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CCAGCGCCGAAUCCC*GACAUGUGGCGUACG*CCGGAGUCG*CAAAGCG*UAAG
- Length
- 50 nucleotides
- Bulged bases
- 4UJC|1|A2|G|116, 4UJC|1|A2|G|119, 4UJC|1|A2|A|120, 4UJC|1|A2|G|148, 4UJC|1|A2|U|149, 4UJC|1|A2|A|155, 4UJC|1|A2|C|156, 4UJC|1|A2|C|300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|A2|C|111
4UJC|1|A2|C|112
4UJC|1|A2|A|113
4UJC|1|A2|G|114
4UJC|1|A2|C|115
4UJC|1|A2|G|116
4UJC|1|A2|C|117
4UJC|1|A2|C|118
4UJC|1|A2|G|119
4UJC|1|A2|A|120
4UJC|1|A2|A|121
4UJC|1|A2|U|122
4UJC|1|A2|C|123
4UJC|1|A2|C|124
4UJC|1|A2|C|125
*
4UJC|1|A2|G|143
4UJC|1|A2|A|144
4UJC|1|A2|C|145
4UJC|1|A2|A|146
4UJC|1|A2|U|147
4UJC|1|A2|G|148
4UJC|1|A2|U|149
4UJC|1|A2|G|150
4UJC|1|A2|G|151
4UJC|1|A2|C|152
4UJC|1|A2|G|153
4UJC|1|A2|U|154
4UJC|1|A2|A|155
4UJC|1|A2|C|156
4UJC|1|A2|G|157
*
4UJC|1|A2|C|266
4UJC|1|A2|C|267
4UJC|1|A2|G|268
4UJC|1|A2|G|269
4UJC|1|A2|A|270
4UJC|1|A2|G|271
4UJC|1|A2|U|272
4UJC|1|A2|C|273
4UJC|1|A2|G|274
*
4UJC|1|A2|C|295
4UJC|1|A2|A|296
4UJC|1|A2|A|297
4UJC|1|A2|A|298
4UJC|1|A2|G|299
4UJC|1|A2|C|300
4UJC|1|A2|G|301
*
4UJC|1|A2|U|318
4UJC|1|A2|A|319
4UJC|1|A2|A|320
4UJC|1|A2|G|321
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BG
- 60S RIBOSOMAL PROTEIN L7A
- Chain BL
- 60S RIBOSOMAL PROTEIN L13
- Chain BN
- 60S RIBOSOMAL PROTEIN L15
- Chain Bh
- 60S RIBOSOMAL PROTEIN UL29
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36
Coloring options: