J5_4UJC_007

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUGG*CAUGCCGACGGGC*GUGCAUUU*AACCUCGGGCCGAUCG*CGACGACC

Length

69 nucleotides

Bulged bases

4UJC|1|C1|U|124, 4UJC|1|C1|C|125, 4UJC|1|C1|G|126, 4UJC|1|C1|C|127, 4UJC|1|C1|C|133, 4UJC|1|C1|C|134, 4UJC|1|C1|U|135, 4UJC|1|C1|C|136, 4UJC|1|C1|U|137, 4UJC|1|C1|C|138, 4UJC|1|C1|C|139, 4UJC|1|C1|C|140, 4UJC|1|C1|U|143, 4UJC|1|C1|U|144, 4UJC|1|C1|C|182, 4UJC|1|C1|C|304, 4UJC|1|C1|U|305, 4UJC|1|C1|C|306, 4UJC|1|C1|G|307, 4UJC|1|C1|C|311, 4UJC|1|C1|C|337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|C1|G|123
4UJC|1|C1|U|124
4UJC|1|C1|C|125
4UJC|1|C1|G|126
4UJC|1|C1|C|127
4UJC|1|C1|U|128
4UJC|1|C1|C|129
4UJC|1|C1|G|130
4UJC|1|C1|C|131
4UJC|1|C1|U|132
4UJC|1|C1|C|133
4UJC|1|C1|C|134
4UJC|1|C1|U|135
4UJC|1|C1|C|136
4UJC|1|C1|U|137
4UJC|1|C1|C|138
4UJC|1|C1|C|139
4UJC|1|C1|C|140
4UJC|1|C1|A|141
4UJC|1|C1|C|142
4UJC|1|C1|U|143
4UJC|1|C1|U|144
4UJC|1|C1|G|145
4UJC|1|C1|G|146
*
4UJC|1|C1|C|174
4UJC|1|C1|A|175
4UJC|1|C1|U|176
4UJC|1|C1|G|177
4UJC|1|C1|C|178
4UJC|1|C1|C|179
4UJC|1|C1|G|180
4UJC|1|C1|A|181
4UJC|1|C1|C|182
4UJC|1|C1|G|183
4UJC|1|C1|G|184
4UJC|1|C1|G|185
4UJC|1|C1|C|186
*
4UJC|1|C1|G|213
4UJC|1|C1|U|214
4UJC|1|C1|G|215
4UJC|1|C1|C|216
4UJC|1|C1|A|217
4UJC|1|C1|U|218
4UJC|1|C1|U|219
4UJC|1|C1|U|220
*
4UJC|1|C1|A|301
4UJC|1|C1|A|302
4UJC|1|C1|C|303
4UJC|1|C1|C|304
4UJC|1|C1|U|305
4UJC|1|C1|C|306
4UJC|1|C1|G|307
4UJC|1|C1|G|308
4UJC|1|C1|G|309
4UJC|1|C1|C|310
4UJC|1|C1|C|311
4UJC|1|C1|G|312
4UJC|1|C1|A|313
4UJC|1|C1|U|314
4UJC|1|C1|C|315
4UJC|1|C1|G|316
*
4UJC|1|C1|C|334
4UJC|1|C1|G|335
4UJC|1|C1|A|336
4UJC|1|C1|C|337
4UJC|1|C1|G|338
4UJC|1|C1|A|339
4UJC|1|C1|C|340
4UJC|1|C1|C|341

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CG

40S RIBOSOMAL PROTEIN ES6

Chain CI

40S RIBOSOMAL PROTEIN ES8