J5_4UJC_008

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGAAGACC*GGAUAACUGGCU*GAUCCUUCGAUGU*GUUUAG*UAGUUU

Length

45 nucleotides

Bulged bases

4UJC|1|A2|A|3875, 4UJC|1|A2|A|4354, 4UJC|1|A2|U|4355, 4UJC|1|A2|G|4408, 4UJC|1|A2|U|4410, 4UJC|1|A2|U|4515

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|A|3872
4UJC|1|A2|G|3873
4UJC|1|A2|A|3874
4UJC|1|A2|A|3875
4UJC|1|A2|G|3876
4UJC|1|A2|A|3877
4UJC|1|A2|C|3878
4UJC|1|A2|C|3879
*
4UJC|1|A2|G|4352
4UJC|1|A2|G|4353
4UJC|1|A2|A|4354
4UJC|1|A2|U|4355
4UJC|1|A2|A|4356
4UJC|1|A2|A|4357
4UJC|1|A2|C|4358
4UJC|1|A2|U|4359
4UJC|1|A2|G|4360
4UJC|1|A2|G|4361
4UJC|1|A2|C|4362
4UJC|1|A2|U|4363
*
4UJC|1|A2|G|4400
4UJC|1|A2|A|4401
4UJC|1|A2|U|4402
4UJC|1|A2|C|4403
4UJC|1|A2|C|4404
4UJC|1|A2|U|4405
4UJC|1|A2|U|4406
4UJC|1|A2|C|4407
4UJC|1|A2|G|4408
4UJC|1|A2|A|4409
4UJC|1|A2|U|4410
4UJC|1|A2|G|4411
4UJC|1|A2|U|4412
*
4UJC|1|A2|G|4489
4UJC|1|A2|U|4490
4UJC|1|A2|U|4491
4UJC|1|A2|U|4492
4UJC|1|A2|A|4493
4UJC|1|A2|G|4494
*
4UJC|1|A2|U|4512
4UJC|1|A2|A|4513
4UJC|1|A2|G|4514
4UJC|1|A2|U|4515
4UJC|1|A2|U|4516
4UJC|1|A2|U|4517

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain BP

60S RIBOSOMAL PROTEIN L17

Chain Bb

60S RIBOSOMAL PROTEIN L29