J5_4UJD_007

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUGG*CAUGCCGACGGGC*GUGCAUUU*AACCUCGGGCCGAUCG*CGACGACC

Length

69 nucleotides

Bulged bases

4UJD|1|C1|U|124, 4UJD|1|C1|C|125, 4UJD|1|C1|G|126, 4UJD|1|C1|C|127, 4UJD|1|C1|C|133, 4UJD|1|C1|C|134, 4UJD|1|C1|U|135, 4UJD|1|C1|C|136, 4UJD|1|C1|U|137, 4UJD|1|C1|C|138, 4UJD|1|C1|C|139, 4UJD|1|C1|C|140, 4UJD|1|C1|U|143, 4UJD|1|C1|U|144, 4UJD|1|C1|C|182, 4UJD|1|C1|C|304, 4UJD|1|C1|U|305, 4UJD|1|C1|C|306, 4UJD|1|C1|G|307, 4UJD|1|C1|C|311, 4UJD|1|C1|C|337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|C1|G|123
4UJD|1|C1|U|124
4UJD|1|C1|C|125
4UJD|1|C1|G|126
4UJD|1|C1|C|127
4UJD|1|C1|U|128
4UJD|1|C1|C|129
4UJD|1|C1|G|130
4UJD|1|C1|C|131
4UJD|1|C1|U|132
4UJD|1|C1|C|133
4UJD|1|C1|C|134
4UJD|1|C1|U|135
4UJD|1|C1|C|136
4UJD|1|C1|U|137
4UJD|1|C1|C|138
4UJD|1|C1|C|139
4UJD|1|C1|C|140
4UJD|1|C1|A|141
4UJD|1|C1|C|142
4UJD|1|C1|U|143
4UJD|1|C1|U|144
4UJD|1|C1|G|145
4UJD|1|C1|G|146
*
4UJD|1|C1|C|174
4UJD|1|C1|A|175
4UJD|1|C1|U|176
4UJD|1|C1|G|177
4UJD|1|C1|C|178
4UJD|1|C1|C|179
4UJD|1|C1|G|180
4UJD|1|C1|A|181
4UJD|1|C1|C|182
4UJD|1|C1|G|183
4UJD|1|C1|G|184
4UJD|1|C1|G|185
4UJD|1|C1|C|186
*
4UJD|1|C1|G|213
4UJD|1|C1|U|214
4UJD|1|C1|G|215
4UJD|1|C1|C|216
4UJD|1|C1|A|217
4UJD|1|C1|U|218
4UJD|1|C1|U|219
4UJD|1|C1|U|220
*
4UJD|1|C1|A|301
4UJD|1|C1|A|302
4UJD|1|C1|C|303
4UJD|1|C1|C|304
4UJD|1|C1|U|305
4UJD|1|C1|C|306
4UJD|1|C1|G|307
4UJD|1|C1|G|308
4UJD|1|C1|G|309
4UJD|1|C1|C|310
4UJD|1|C1|C|311
4UJD|1|C1|G|312
4UJD|1|C1|A|313
4UJD|1|C1|U|314
4UJD|1|C1|C|315
4UJD|1|C1|G|316
*
4UJD|1|C1|C|334
4UJD|1|C1|G|335
4UJD|1|C1|A|336
4UJD|1|C1|C|337
4UJD|1|C1|G|338
4UJD|1|C1|A|339
4UJD|1|C1|C|340
4UJD|1|C1|C|341

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CG

40S RIBOSOMAL PROTEIN ES6

Chain CI

40S RIBOSOMAL PROTEIN ES8