J5_4UJE_001

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCAGCGCCGAAUCCC*GACAUGUGGCGUACG*CCGGAGUCG*CAAAGCG*UAAG

Length

50 nucleotides

Bulged bases

4UJE|1|A2|G|116, 4UJE|1|A2|G|119, 4UJE|1|A2|A|120, 4UJE|1|A2|G|148, 4UJE|1|A2|U|149, 4UJE|1|A2|A|155, 4UJE|1|A2|C|156, 4UJE|1|A2|C|300

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|111
4UJE|1|A2|C|112
4UJE|1|A2|A|113
4UJE|1|A2|G|114
4UJE|1|A2|C|115
4UJE|1|A2|G|116
4UJE|1|A2|C|117
4UJE|1|A2|C|118
4UJE|1|A2|G|119
4UJE|1|A2|A|120
4UJE|1|A2|A|121
4UJE|1|A2|U|122
4UJE|1|A2|C|123
4UJE|1|A2|C|124
4UJE|1|A2|C|125
*
4UJE|1|A2|G|143
4UJE|1|A2|A|144
4UJE|1|A2|C|145
4UJE|1|A2|A|146
4UJE|1|A2|U|147
4UJE|1|A2|G|148
4UJE|1|A2|U|149
4UJE|1|A2|G|150
4UJE|1|A2|G|151
4UJE|1|A2|C|152
4UJE|1|A2|G|153
4UJE|1|A2|U|154
4UJE|1|A2|A|155
4UJE|1|A2|C|156
4UJE|1|A2|G|157
*
4UJE|1|A2|C|266
4UJE|1|A2|C|267
4UJE|1|A2|G|268
4UJE|1|A2|G|269
4UJE|1|A2|A|270
4UJE|1|A2|G|271
4UJE|1|A2|U|272
4UJE|1|A2|C|273
4UJE|1|A2|G|274
*
4UJE|1|A2|C|295
4UJE|1|A2|A|296
4UJE|1|A2|A|297
4UJE|1|A2|A|298
4UJE|1|A2|G|299
4UJE|1|A2|C|300
4UJE|1|A2|G|301
*
4UJE|1|A2|U|318
4UJE|1|A2|A|319
4UJE|1|A2|A|320
4UJE|1|A2|G|321

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain CG

60S RIBOSOMAL PROTEIN L7A

Chain CL

60S RIBOSOMAL PROTEIN L13

Chain CN

60S RIBOSOMAL PROTEIN L15

Chain Ch

60S RIBOSOMAL PROTEIN L35

Chain Ci

60S RIBOSOMAL PROTEIN L36