J5_4UJE_004
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUGGCU*GAUCCUUCGAUGU*GUUUAGA*UUAGUUU
- Length
- 47 nucleotides
- Bulged bases
- 4UJE|1|A2|A|3875, 4UJE|1|A2|A|4354, 4UJE|1|A2|U|4355, 4UJE|1|A2|G|4408, 4UJE|1|A2|U|4410, 4UJE|1|A2|U|4515
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJE|1|A2|A|3872
4UJE|1|A2|G|3873
4UJE|1|A2|A|3874
4UJE|1|A2|A|3875
4UJE|1|A2|G|3876
4UJE|1|A2|A|3877
4UJE|1|A2|C|3878
4UJE|1|A2|C|3879
*
4UJE|1|A2|G|4352
4UJE|1|A2|G|4353
4UJE|1|A2|A|4354
4UJE|1|A2|U|4355
4UJE|1|A2|A|4356
4UJE|1|A2|A|4357
4UJE|1|A2|C|4358
4UJE|1|A2|U|4359
4UJE|1|A2|G|4360
4UJE|1|A2|G|4361
4UJE|1|A2|C|4362
4UJE|1|A2|U|4363
*
4UJE|1|A2|G|4400
4UJE|1|A2|A|4401
4UJE|1|A2|U|4402
4UJE|1|A2|C|4403
4UJE|1|A2|C|4404
4UJE|1|A2|U|4405
4UJE|1|A2|U|4406
4UJE|1|A2|C|4407
4UJE|1|A2|G|4408
4UJE|1|A2|A|4409
4UJE|1|A2|U|4410
4UJE|1|A2|G|4411
4UJE|1|A2|U|4412
*
4UJE|1|A2|G|4489
4UJE|1|A2|U|4490
4UJE|1|A2|U|4491
4UJE|1|A2|U|4492
4UJE|1|A2|A|4493
4UJE|1|A2|G|4494
4UJE|1|A2|A|4495
*
4UJE|1|A2|U|4511
4UJE|1|A2|U|4512
4UJE|1|A2|A|4513
4UJE|1|A2|G|4514
4UJE|1|A2|U|4515
4UJE|1|A2|U|4516
4UJE|1|A2|U|4517
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain CA
- 60S RIBOSOMAL PROTEIN L8
- Chain CB
- 60S RIBOSOMAL PROTEIN L3
- Chain CC
- 60S RIBOSOMAL PROTEIN L4
- Chain CI
- 60S RIBOSOMAL PROTEIN L10
- Chain CP
- 60S RIBOSOMAL PROTEIN L17
- Chain Cb
- 60S RIBOSOMAL PROTEIN L29
Coloring options: