J5_4UJE_005

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAG*CGAGGAUCCAU*AUAG

Length

37 nucleotides

Bulged bases

4UJE|1|B1|U|524, 4UJE|1|B1|A|526, 4UJE|1|B1|G|589, 4UJE|1|B1|A|590, 4UJE|1|B1|U|591, 4UJE|1|B1|C|593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|B1|C|30
4UJE|1|B1|U|31
4UJE|1|B1|U|32
4UJE|1|B1|G|33
4UJE|1|B1|U|34
*
4UJE|1|B1|A|521
4UJE|1|B1|A|522
4UJE|1|B1|A|523
4UJE|1|B1|U|524
4UJE|1|B1|A|525
4UJE|1|B1|A|526
4UJE|1|B1|C|527
4UJE|1|B1|A|528
*
4UJE|1|B1|U|557
4UJE|1|B1|G|558
4UJE|1|B1|G|559
4UJE|1|B1|A|560
4UJE|1|B1|A|561
4UJE|1|B1|U|562
4UJE|1|B1|G|563
4UJE|1|B1|A|564
4UJE|1|B1|G|565
*
4UJE|1|B1|C|585
4UJE|1|B1|G|586
4UJE|1|B1|A|587
4UJE|1|B1|G|588
4UJE|1|B1|G|589
4UJE|1|B1|A|590
4UJE|1|B1|U|591
4UJE|1|B1|C|592
4UJE|1|B1|C|593
4UJE|1|B1|A|594
4UJE|1|B1|U|595
*
4UJE|1|B1|A|641
4UJE|1|B1|U|642
4UJE|1|B1|A|643
4UJE|1|B1|G|644

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BJ

40S RIBOSOMAL PROTEIN S9

Chain BX

40S RIBOSOMAL PROTEIN S23

Chain Be

40S RIBOSOMAL PROTEIN S30