J5_4UJE_009

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUUGG*CAUGCCGACGGGC*GUGCAUU*ACCUCGGGCCGAUCG*CGACGACC

Length

67 nucleotides

Bulged bases

4UJE|1|B1|U|124, 4UJE|1|B1|C|125, 4UJE|1|B1|G|126, 4UJE|1|B1|C|127, 4UJE|1|B1|C|133, 4UJE|1|B1|C|134, 4UJE|1|B1|U|135, 4UJE|1|B1|C|136, 4UJE|1|B1|U|137, 4UJE|1|B1|C|138, 4UJE|1|B1|C|139, 4UJE|1|B1|C|140, 4UJE|1|B1|U|143, 4UJE|1|B1|U|144, 4UJE|1|B1|C|182, 4UJE|1|B1|C|304, 4UJE|1|B1|U|305, 4UJE|1|B1|C|306, 4UJE|1|B1|G|307, 4UJE|1|B1|C|311, 4UJE|1|B1|C|337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|B1|G|123
4UJE|1|B1|U|124
4UJE|1|B1|C|125
4UJE|1|B1|G|126
4UJE|1|B1|C|127
4UJE|1|B1|U|128
4UJE|1|B1|C|129
4UJE|1|B1|G|130
4UJE|1|B1|C|131
4UJE|1|B1|U|132
4UJE|1|B1|C|133
4UJE|1|B1|C|134
4UJE|1|B1|U|135
4UJE|1|B1|C|136
4UJE|1|B1|U|137
4UJE|1|B1|C|138
4UJE|1|B1|C|139
4UJE|1|B1|C|140
4UJE|1|B1|A|141
4UJE|1|B1|C|142
4UJE|1|B1|U|143
4UJE|1|B1|U|144
4UJE|1|B1|G|145
4UJE|1|B1|G|146
*
4UJE|1|B1|C|174
4UJE|1|B1|A|175
4UJE|1|B1|U|176
4UJE|1|B1|G|177
4UJE|1|B1|C|178
4UJE|1|B1|C|179
4UJE|1|B1|G|180
4UJE|1|B1|A|181
4UJE|1|B1|C|182
4UJE|1|B1|G|183
4UJE|1|B1|G|184
4UJE|1|B1|G|185
4UJE|1|B1|C|186
*
4UJE|1|B1|G|213
4UJE|1|B1|U|214
4UJE|1|B1|G|215
4UJE|1|B1|C|216
4UJE|1|B1|A|217
4UJE|1|B1|U|218
4UJE|1|B1|U|219
*
4UJE|1|B1|A|302
4UJE|1|B1|C|303
4UJE|1|B1|C|304
4UJE|1|B1|U|305
4UJE|1|B1|C|306
4UJE|1|B1|G|307
4UJE|1|B1|G|308
4UJE|1|B1|G|309
4UJE|1|B1|C|310
4UJE|1|B1|C|311
4UJE|1|B1|G|312
4UJE|1|B1|A|313
4UJE|1|B1|U|314
4UJE|1|B1|C|315
4UJE|1|B1|G|316
*
4UJE|1|B1|C|334
4UJE|1|B1|G|335
4UJE|1|B1|A|336
4UJE|1|B1|C|337
4UJE|1|B1|G|338
4UJE|1|B1|A|339
4UJE|1|B1|C|340
4UJE|1|B1|C|341

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BE

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain BG

40S RIBOSOMAL PROTEIN S6

Chain BI

40S RIBOSOMAL PROTEIN S8