J5_4UY8_001

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4UY8|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4UY8_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0589

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4UY8|1|A|C|47
4UY8|1|A|G|48
4UY8|1|A|A|49
4UY8|1|A|U|50
4UY8|1|A|G|51
4UY8|1|A|A|52
4UY8|1|A|A|53
4UY8|1|A|G|54
*
4UY8|1|A|C|116
4UY8|1|A|G|117
4UY8|1|A|A|118
4UY8|1|A|A|119
4UY8|1|A|U|120
4UY8|1|A|G|121
*
4UY8|1|A|C|130
4UY8|1|A|A|131
*
4UY8|1|A|U|148
4UY8|1|A|A|149
4UY8|1|A|U|150
*
4UY8|1|A|A|176
4UY8|1|A|G|177
4UY8|1|A|G|178

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34