J5_4V49_006

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4V49|1|B0|A|2043, 4V49|1|B0|A|2045, 4V49|1|B0|A|2427, 4V49|1|B0|G|2481, 4V49|1|B0|U|2564, 4V49|1|B0|A|2566, 4V49|1|B0|U|2588

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V49|1|B0|A|2040
4V49|1|B0|A|2041
4V49|1|B0|A|2042
4V49|1|B0|A|2043
4V49|1|B0|G|2044
4V49|1|B0|A|2045
4V49|1|B0|C|2046
4V49|1|B0|C|2047
*
4V49|1|B0|G|2425
4V49|1|B0|G|2426
4V49|1|B0|A|2427
4V49|1|B0|U|2428
4V49|1|B0|A|2429
4V49|1|B0|A|2430
4V49|1|B0|C|2431
4V49|1|B0|A|2432
*
4V49|1|B0|U|2479
4V49|1|B0|C|2480
4V49|1|B0|G|2481
4V49|1|B0|A|2482
4V49|1|B0|U|2483
4V49|1|B0|G|2484
4V49|1|B0|U|2485
4V49|1|B0|C|2486
*
4V49|1|B0|G|2561
4V49|1|B0|G|2562
4V49|1|B0|U|2563
4V49|1|B0|U|2564
4V49|1|B0|C|2565
4V49|1|B0|A|2566
4V49|1|B0|G|2567
*
4V49|1|B0|C|2585
4V49|1|B0|G|2586
4V49|1|B0|G|2587
4V49|1|B0|U|2588
4V49|1|B0|C|2589
4V49|1|B0|U|2590

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AW

Transfer RNA; tRNA

Chain BA

50S ribosomal protein L2

Chain BC

50S ribosomal protein L4

Chain BZ

50S ribosomal protein L32