J5_4V4A_004
3D structure
- PDB id
- 4V4A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 9.5 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGGAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V4A|1|B0|U|1268
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V4A_004 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.2546
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V4A|1|B0|C|593
4V4A|1|B0|G|594
4V4A|1|B0|A|595
4V4A|1|B0|C|596
4V4A|1|B0|U|597
4V4A|1|B0|U|598
*
4V4A|1|B0|A|681
4V4A|1|B0|G|682
4V4A|1|B0|A|683
4V4A|1|B0|C|684
*
4V4A|1|B0|G|822
4V4A|1|B0|U|823
4V4A|1|B0|U|824
4V4A|1|B0|C|825
*
4V4A|1|B0|G|1209
4V4A|1|B0|C|1210
*
4V4A|1|B0|G|1263
4V4A|1|B0|C|1264
4V4A|1|B0|G|1265
4V4A|1|B0|G|1266
4V4A|1|B0|A|1267
4V4A|1|B0|U|1268
4V4A|1|B0|G|1269
Current chains
- Chain B0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L4
- Chain BJ
- 50S ribosomal protein L15
- Chain BO
- 50S ribosomal protein L20
- Chain BP
- 50S ribosomal protein L21
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