J5_4V4A_006

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4V4A|1|B0|A|2043, 4V4A|1|B0|A|2045, 4V4A|1|B0|A|2427, 4V4A|1|B0|G|2481, 4V4A|1|B0|U|2564, 4V4A|1|B0|A|2566, 4V4A|1|B0|U|2588

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4A|1|B0|A|2040
4V4A|1|B0|A|2041
4V4A|1|B0|A|2042
4V4A|1|B0|A|2043
4V4A|1|B0|G|2044
4V4A|1|B0|A|2045
4V4A|1|B0|C|2046
4V4A|1|B0|C|2047
*
4V4A|1|B0|G|2425
4V4A|1|B0|G|2426
4V4A|1|B0|A|2427
4V4A|1|B0|U|2428
4V4A|1|B0|A|2429
4V4A|1|B0|A|2430
4V4A|1|B0|C|2431
4V4A|1|B0|A|2432
*
4V4A|1|B0|U|2479
4V4A|1|B0|C|2480
4V4A|1|B0|G|2481
4V4A|1|B0|A|2482
4V4A|1|B0|U|2483
4V4A|1|B0|G|2484
4V4A|1|B0|U|2485
4V4A|1|B0|C|2486
*
4V4A|1|B0|G|2561
4V4A|1|B0|G|2562
4V4A|1|B0|U|2563
4V4A|1|B0|U|2564
4V4A|1|B0|C|2565
4V4A|1|B0|A|2566
4V4A|1|B0|G|2567
*
4V4A|1|B0|C|2585
4V4A|1|B0|G|2586
4V4A|1|B0|G|2587
4V4A|1|B0|U|2588
4V4A|1|B0|C|2589
4V4A|1|B0|U|2590

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BA

50S ribosomal protein L2

Chain BC

50S ribosomal protein L4

Chain BZ

50S ribosomal protein L32