J5_4V4G_029

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

4V4G|1|JB|A|595, 4V4G|1|JB|U|824, 4V4G|1|JB|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4G_029 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.4682

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4V4G|1|JB|C|593
4V4G|1|JB|G|594
4V4G|1|JB|A|595
4V4G|1|JB|C|596
4V4G|1|JB|U|597
4V4G|1|JB|U|598
*
4V4G|1|JB|A|681
4V4G|1|JB|G|682
4V4G|1|JB|A|683
4V4G|1|JB|C|684
*
4V4G|1|JB|G|822
4V4G|1|JB|U|823
4V4G|1|JB|U|824
4V4G|1|JB|C|825
*
4V4G|1|JB|G|1209
4V4G|1|JB|C|1210
*
4V4G|1|JB|G|1263
4V4G|1|JB|C|1264
4V4G|1|JB|G|1265
4V4G|1|JB|G|1266
4V4G|1|JB|A|1267
4V4G|1|JB|U|1268
4V4G|1|JB|G|1269

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JF

50S ribosomal protein L4

Chain JM

50S ribosomal protein L15

Chain JR

50S ribosomal protein L20