J5_4V4I_001

3D structure

PDB id

4V4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V4I|1|w|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4I_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.2975

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V4I|1|w|C|47
4V4I|1|w|G|48
4V4I|1|w|A|49
4V4I|1|w|U|50
4V4I|1|w|G|51
4V4I|1|w|A|52
4V4I|1|w|A|53
4V4I|1|w|G|54
*
4V4I|1|w|C|116
4V4I|1|w|G|117
4V4I|1|w|A|118
4V4I|1|w|A|119
4V4I|1|w|U|120
4V4I|1|w|G|121
*
4V4I|1|w|C|130
4V4I|1|w|G|131
*
4V4I|1|w|C|148
4V4I|1|w|A|149
4V4I|1|w|C|150
*
4V4I|1|w|G|176
4V4I|1|w|G|177
4V4I|1|w|G|178

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L34