J5_4V4J_006

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GAAAAGACC*GGAUAACAG*CCUCGAUGU*GUUCAG*CGGUCUC

Length

40 nucleotides

Bulged bases

4V4J|1|w|A|2448, 4V4J|1|w|U|2449, 4V4J|1|w|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4J|1|w|G|2056
4V4J|1|w|A|2057
4V4J|1|w|A|2058
4V4J|1|w|A|2059
4V4J|1|w|A|2060
4V4J|1|w|G|2061
4V4J|1|w|A|2062
4V4J|1|w|C|2063
4V4J|1|w|C|2064
*
4V4J|1|w|G|2446
4V4J|1|w|G|2447
4V4J|1|w|A|2448
4V4J|1|w|U|2449
4V4J|1|w|A|2450
4V4J|1|w|A|2451
4V4J|1|w|C|2452
4V4J|1|w|A|2453
4V4J|1|w|G|2454
*
4V4J|1|w|C|2498
4V4J|1|w|C|2499
4V4J|1|w|U|2500
4V4J|1|w|C|2501
4V4J|1|w|G|2502
4V4J|1|w|A|2503
4V4J|1|w|U|2504
4V4J|1|w|G|2505
4V4J|1|w|U|2506
*
4V4J|1|w|G|2583
4V4J|1|w|U|2584
4V4J|1|w|U|2585
4V4J|1|w|C|2586
4V4J|1|w|A|2587
4V4J|1|w|G|2588
*
4V4J|1|w|C|2606
4V4J|1|w|G|2607
4V4J|1|w|G|2608
4V4J|1|w|U|2609
4V4J|1|w|C|2610
4V4J|1|w|U|2611
4V4J|1|w|C|2612

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain C

50S ribosomal protein L3

Chain D

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain Y

50S ribosomal protein L32

Chain z

Transfer RNA; tRNA