J5_4V4P_003

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CAAGGGUUC*GGUUAG*CU*ACCCGUACCGCAAAC*GUG

Length

35 nucleotides

Bulged bases

4V4P|1|AA|G|1311, 4V4P|1|AA|U|1341, 4V4P|1|AA|C|1607, 4V4P|1|AA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|C|1306
4V4P|1|AA|A|1307
4V4P|1|AA|A|1308
4V4P|1|AA|G|1309
4V4P|1|AA|G|1310
4V4P|1|AA|G|1311
4V4P|1|AA|U|1312
4V4P|1|AA|U|1313
4V4P|1|AA|C|1314
*
4V4P|1|AA|G|1338
4V4P|1|AA|G|1339
4V4P|1|AA|U|1340
4V4P|1|AA|U|1341
4V4P|1|AA|A|1342
4V4P|1|AA|G|1343
*
4V4P|1|AA|C|1404
4V4P|1|AA|U|1405
*
4V4P|1|AA|A|1597
4V4P|1|AA|C|1598
4V4P|1|AA|C|1599
4V4P|1|AA|C|1600
4V4P|1|AA|G|1601
4V4P|1|AA|U|1602
4V4P|1|AA|A|1603
4V4P|1|AA|C|1604
4V4P|1|AA|C|1605
4V4P|1|AA|G|1606
4V4P|1|AA|C|1607
4V4P|1|AA|A|1608
4V4P|1|AA|A|1609
4V4P|1|AA|A|1610
4V4P|1|AA|C|1611
*
4V4P|1|AA|G|1620
4V4P|1|AA|U|1621
4V4P|1|AA|G|1622

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AT

50S ribosomal protein L23