J5_4V4P_004

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUCGG*CUGGGUUCAG*CGGUCU

Length

42 nucleotides

Bulged bases

4V4P|1|AA|A|2062, 4V4P|1|AA|A|2448, 4V4P|1|AA|G|2505, 4V4P|1|AA|G|2581, 4V4P|1|AA|A|2587, 4V4P|1|AA|U|2609, 4V4P|1|AA|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|A|2057
4V4P|1|AA|A|2058
4V4P|1|AA|A|2059
4V4P|1|AA|A|2060
4V4P|1|AA|G|2061
4V4P|1|AA|A|2062
4V4P|1|AA|C|2063
4V4P|1|AA|C|2064
*
4V4P|1|AA|G|2446
4V4P|1|AA|G|2447
4V4P|1|AA|A|2448
4V4P|1|AA|U|2449
4V4P|1|AA|A|2450
4V4P|1|AA|A|2451
4V4P|1|AA|C|2452
4V4P|1|AA|A|2453
*
4V4P|1|AA|U|2500
4V4P|1|AA|C|2501
4V4P|1|AA|G|2502
4V4P|1|AA|A|2503
4V4P|1|AA|U|2504
4V4P|1|AA|G|2505
4V4P|1|AA|U|2506
4V4P|1|AA|C|2507
4V4P|1|AA|G|2508
4V4P|1|AA|G|2509
*
4V4P|1|AA|C|2579
4V4P|1|AA|U|2580
4V4P|1|AA|G|2581
4V4P|1|AA|G|2582
4V4P|1|AA|G|2583
4V4P|1|AA|U|2584
4V4P|1|AA|U|2585
4V4P|1|AA|C|2586
4V4P|1|AA|A|2587
4V4P|1|AA|G|2588
*
4V4P|1|AA|C|2606
4V4P|1|AA|G|2607
4V4P|1|AA|G|2608
4V4P|1|AA|U|2609
4V4P|1|AA|C|2610
4V4P|1|AA|U|2611

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AD

50S ribosomal protein L2

Chain AE

50S ribosomal protein L3

Chain AF

50S ribosomal protein L4

Chain AP

50S ribosomal protein L16

Chain BB

Transfer RNA; tRNA

Chain BC

Transfer RNA; tRNA