J5_4V4S_006
3D structure
- PDB id
- 4V4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.76 Å
Loop
- Sequence
- GACGAAAAGACC*GGAUAACAG*CCUCGAUGUCGG*CUGGGUUCAGAAC*GUUCGGUCUCUAUC
- Length
- 60 nucleotides
- Bulged bases
- 4V4S|1|BA|C|2055, 4V4S|1|BA|A|2062, 4V4S|1|BA|A|2448, 4V4S|1|BA|A|2503, 4V4S|1|BA|G|2505, 4V4S|1|BA|U|2506, 4V4S|1|BA|G|2581, 4V4S|1|BA|A|2587, 4V4S|1|BA|U|2609, 4V4S|1|BA|C|2610, 4V4S|1|BA|C|2612, 4V4S|1|BA|U|2613, 4V4S|1|BA|A|2614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4S|1|BA|G|2053
4V4S|1|BA|A|2054
4V4S|1|BA|C|2055
4V4S|1|BA|G|2056
4V4S|1|BA|A|2057
4V4S|1|BA|A|2058
4V4S|1|BA|A|2059
4V4S|1|BA|A|2060
4V4S|1|BA|G|2061
4V4S|1|BA|A|2062
4V4S|1|BA|C|2063
4V4S|1|BA|C|2064
*
4V4S|1|BA|G|2446
4V4S|1|BA|G|2447
4V4S|1|BA|A|2448
4V4S|1|BA|U|2449
4V4S|1|BA|A|2450
4V4S|1|BA|A|2451
4V4S|1|BA|C|2452
4V4S|1|BA|A|2453
4V4S|1|BA|G|2454
*
4V4S|1|BA|C|2498
4V4S|1|BA|C|2499
4V4S|1|BA|U|2500
4V4S|1|BA|C|2501
4V4S|1|BA|G|2502
4V4S|1|BA|A|2503
4V4S|1|BA|U|2504
4V4S|1|BA|G|2505
4V4S|1|BA|U|2506
4V4S|1|BA|C|2507
4V4S|1|BA|G|2508
4V4S|1|BA|G|2509
*
4V4S|1|BA|C|2579
4V4S|1|BA|U|2580
4V4S|1|BA|G|2581
4V4S|1|BA|G|2582
4V4S|1|BA|G|2583
4V4S|1|BA|U|2584
4V4S|1|BA|U|2585
4V4S|1|BA|C|2586
4V4S|1|BA|A|2587
4V4S|1|BA|G|2588
4V4S|1|BA|A|2589
4V4S|1|BA|A|2590
4V4S|1|BA|C|2591
*
4V4S|1|BA|G|2603
4V4S|1|BA|U|2604
4V4S|1|BA|U|2605
4V4S|1|BA|C|2606
4V4S|1|BA|G|2607
4V4S|1|BA|G|2608
4V4S|1|BA|U|2609
4V4S|1|BA|C|2610
4V4S|1|BA|U|2611
4V4S|1|BA|C|2612
4V4S|1|BA|U|2613
4V4S|1|BA|A|2614
4V4S|1|BA|U|2615
4V4S|1|BA|C|2616
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain AY
- Peptide chain release factor 2
- Chain B5
- 50S ribosomal protein L32
- Chain BD
- 50S ribosomal protein L2
- Chain BE
- 50S ribosomal protein L3
- Chain BF
- 50S ribosomal protein L4
- Chain BQ
- 50S ribosomal protein L16
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