J5_4V4S_009

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

4V4S|1|BA|U|811, 4V4S|1|BA|G|1252, 4V4S|1|BA|A|1253, 4V4S|1|BA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4S_009 not in the Motif Atlas

Homologous match to J5_7A0S_004

Geometric discrepancy: 0.2523

The information below is about J5_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4V4S|1|BA|C|584
4V4S|1|BA|G|585
4V4S|1|BA|A|586
4V4S|1|BA|C|587
4V4S|1|BA|U|588
4V4S|1|BA|C|589
*
4V4S|1|BA|G|668
4V4S|1|BA|G|669
4V4S|1|BA|A|670
4V4S|1|BA|C|671
*
4V4S|1|BA|G|809
4V4S|1|BA|U|810
4V4S|1|BA|U|811
4V4S|1|BA|C|812
*
4V4S|1|BA|G|1195
4V4S|1|BA|C|1196
*
4V4S|1|BA|G|1250
4V4S|1|BA|C|1251
4V4S|1|BA|G|1252
4V4S|1|BA|A|1253
4V4S|1|BA|A|1254
4V4S|1|BA|U|1255
4V4S|1|BA|G|1256

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BU

50S ribosomal protein L20

Chain BV

50S ribosomal protein L21