J5_4V4T_007

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4T_007 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.167

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V4T|1|AA|C|36
4V4T|1|AA|U|37
4V4T|1|AA|G|38
4V4T|1|AA|G|39
*
4V4T|1|AA|C|403
4V4T|1|AA|U|404
4V4T|1|AA|U|405
4V4T|1|AA|G|406
*
4V4T|1|AA|C|436
4V4T|1|AA|U|437
4V4T|1|AA|G|438
4V4T|1|AA|A|439
4V4T|1|AA|A|440
4V4T|1|AA|C|442
*
4V4T|1|AA|G|492
4V4T|1|AA|G|494
4V4T|1|AA|U|495
4V4T|1|AA|A|496
4V4T|1|AA|A|497
4V4T|1|AA|U|498
4V4T|1|AA|A|499
4V4T|1|AA|G|500
*
4V4T|1|AA|C|545
4V4T|1|AA|G|546
4V4T|1|AA|A|547
4V4T|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12