J5_4V4V_005

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACGGAAAGACCC*GGGAUAACAG*CCUCGAUGU*GUUUAG*CGGUCCCUAU

Length

47 nucleotides

Bulged bases

4V4V|1|B0|A|2060, 4V4V|1|B0|A|2448, 4V4V|1|B0|U|2449, 4V4V|1|B0|G|2502, 4V4V|1|B0|U|2585, 4V4V|1|B0|U|2613, 4V4V|1|B0|A|2614

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|A|2054
4V4V|1|B0|C|2055
4V4V|1|B0|G|2056
4V4V|1|B0|G|2057
4V4V|1|B0|A|2058
4V4V|1|B0|A|2059
4V4V|1|B0|A|2060
4V4V|1|B0|G|2061
4V4V|1|B0|A|2062
4V4V|1|B0|C|2063
4V4V|1|B0|C|2064
4V4V|1|B0|C|2065
*
4V4V|1|B0|G|2445
4V4V|1|B0|G|2446
4V4V|1|B0|G|2447
4V4V|1|B0|A|2448
4V4V|1|B0|U|2449
4V4V|1|B0|A|2450
4V4V|1|B0|A|2451
4V4V|1|B0|C|2452
4V4V|1|B0|A|2453
4V4V|1|B0|G|2454
*
4V4V|1|B0|C|2498
4V4V|1|B0|C|2499
4V4V|1|B0|U|2500
4V4V|1|B0|C|2501
4V4V|1|B0|G|2502
4V4V|1|B0|A|2503
4V4V|1|B0|U|2504
4V4V|1|B0|G|2505
4V4V|1|B0|U|2506
*
4V4V|1|B0|G|2583
4V4V|1|B0|U|2584
4V4V|1|B0|U|2585
4V4V|1|B0|U|2586
4V4V|1|B0|A|2587
4V4V|1|B0|G|2588
*
4V4V|1|B0|C|2606
4V4V|1|B0|G|2607
4V4V|1|B0|G|2608
4V4V|1|B0|U|2609
4V4V|1|B0|C|2610
4V4V|1|B0|C|2611
4V4V|1|B0|C|2612
4V4V|1|B0|U|2613
4V4V|1|B0|A|2614
4V4V|1|B0|U|2615

Current chains

Chain B0

23S ribosomal RNA

Nearby chains