J5_4V4V_006

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AACCUUUA*UUUG*CU*AG*CGGAAAAGGUACU

Length

29 nucleotides

Bulged bases

4V4V|1|B0|U|2076, 4V4V|1|B0|G|2428, 4V4V|1|B0|G|2429, 4V4V|1|B0|A|2430, 4V4V|1|B0|A|2433, 4V4V|1|B0|A|2434, 4V4V|1|B0|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|A|2070
4V4V|1|B0|A|2071
4V4V|1|B0|C|2072
4V4V|1|B0|C|2073
4V4V|1|B0|U|2074
4V4V|1|B0|U|2075
4V4V|1|B0|U|2076
4V4V|1|B0|A|2077
*
4V4V|1|B0|U|2243
4V4V|1|B0|U|2244
4V4V|1|B0|U|2245
4V4V|1|B0|G|2246
*
4V4V|1|B0|C|2258
4V4V|1|B0|U|2259
*
4V4V|1|B0|A|2281
4V4V|1|B0|G|2282
*
4V4V|1|B0|C|2427
4V4V|1|B0|G|2428
4V4V|1|B0|G|2429
4V4V|1|B0|A|2430
4V4V|1|B0|A|2433
4V4V|1|B0|A|2434
4V4V|1|B0|A|2435
4V4V|1|B0|G|2436
4V4V|1|B0|G|2437
4V4V|1|B0|U|2438
4V4V|1|B0|A|2439
4V4V|1|B0|C|2440
4V4V|1|B0|U|2441

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BJ

50S ribosomal protein L15

Chain BU

50S ribosomal protein L27