J5_4V4W_001
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V4W|1|AA|A|60, 4V4W|1|AA|A|109, 4V4W|1|AA|C|352, 4V4W|1|AA|A|353
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V4W_001 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.2092
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V4W|1|AA|C|58
4V4W|1|AA|A|59
4V4W|1|AA|A|60
4V4W|1|AA|G|61
*
4V4W|1|AA|C|106
4V4W|1|AA|G|107
4V4W|1|AA|G|108
4V4W|1|AA|A|109
4V4W|1|AA|C|110
4V4W|1|AA|G|111
4V4W|1|AA|G|112
4V4W|1|AA|G|113
*
4V4W|1|AA|C|314
4V4W|1|AA|A|315
4V4W|1|AA|C|316
*
4V4W|1|AA|G|337
4V4W|1|AA|A|338
4V4W|1|AA|C|339
*
4V4W|1|AA|G|350
4V4W|1|AA|G|351
4V4W|1|AA|C|352
4V4W|1|AA|A|353
4V4W|1|AA|G|354
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AP
- 30S ribosomal subunit protein S16
- Chain AT
- 30S ribosomal subunit protein S20
- Chain BI
- 50S ribosomal protein L14
Coloring options: