Loop J5_4V4W

3D structure

PDB id: 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å

Loop

Sequence: CGACUUAU*AUAGACC*GGUUC*GCGUUCUG*CAGAAGUGCGAAUG
Length: 42 nucleotides
Bulged bases: 4V4W|1|B0|C|587, 4V4W|1|B0|C|671, 4V4W|1|B0|G|1248, 4V4W|1|B0|C|1251, 4V4W|1|B0|U|1255
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4W|1|B0|C|584
4V4W|1|B0|G|585
4V4W|1|B0|A|586
4V4W|1|B0|C|587
4V4W|1|B0|U|588
4V4W|1|B0|U|589
4V4W|1|B0|A|590
4V4W|1|B0|U|591
*
4V4W|1|B0|A|666
4V4W|1|B0|U|667
4V4W|1|B0|A|668
4V4W|1|B0|G|669
4V4W|1|B0|A|670
4V4W|1|B0|C|671
4V4W|1|B0|C|672
*
4V4W|1|B0|G|808
4V4W|1|B0|G|809
4V4W|1|B0|U|810
4V4W|1|B0|U|811
4V4W|1|B0|C|812
*
4V4W|1|B0|G|1195
4V4W|1|B0|C|1196
4V4W|1|B0|G|1197
4V4W|1|B0|U|1198
4V4W|1|B0|U|1199
4V4W|1|B0|C|1200
4V4W|1|B0|U|1201
4V4W|1|B0|G|1202
*
4V4W|1|B0|C|1243
4V4W|1|B0|A|1244
4V4W|1|B0|G|1245
4V4W|1|B0|A|1246
4V4W|1|B0|A|1247
4V4W|1|B0|G|1248
4V4W|1|B0|U|1249
4V4W|1|B0|G|1250
4V4W|1|B0|C|1251
4V4W|1|B0|G|1252
4V4W|1|B0|A|1253
4V4W|1|B0|A|1254
4V4W|1|B0|U|1255
4V4W|1|B0|G|1256

Current chains

Chain B0: 23S ribosomal RNA

Nearby chains

Chain BC: 50S ribosomal protein L4
Chain BJ: 50S ribosomal protein L15
Chain BO: 50S ribosomal protein L20

J5_4V4W_002