J5_4V4W_003

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAACUAGGCAAAAUGGU*ACG*UC*GAUACCAGC*GGCUGUC

Length

39 nucleotides

Bulged bases

4V4W|1|B0|G|1763, 4V4W|1|B0|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|1666
4V4W|1|B0|G|1667
4V4W|1|B0|A|1668
4V4W|1|B0|A|1669
4V4W|1|B0|C|1670
4V4W|1|B0|U|1671
4V4W|1|B0|A|1672
4V4W|1|B0|G|1673
4V4W|1|B0|G|1674
4V4W|1|B0|C|1675
4V4W|1|B0|A|1676
4V4W|1|B0|A|1677
4V4W|1|B0|A|1678
4V4W|1|B0|A|1679
4V4W|1|B0|U|1680
4V4W|1|B0|G|1681
4V4W|1|B0|G|1682
4V4W|1|B0|U|1683
*
4V4W|1|B0|A|1705
4V4W|1|B0|C|1706
4V4W|1|B0|G|1707
*
4V4W|1|B0|U|1751
4V4W|1|B0|C|1752
*
4V4W|1|B0|G|1756
4V4W|1|B0|A|1757
4V4W|1|B0|U|1758
4V4W|1|B0|A|1759
4V4W|1|B0|C|1760
4V4W|1|B0|C|1761
4V4W|1|B0|A|1762
4V4W|1|B0|G|1763
4V4W|1|B0|C|1764
*
4V4W|1|B0|G|1988
4V4W|1|B0|G|1989
4V4W|1|B0|C|1990
4V4W|1|B0|U|1991
4V4W|1|B0|G|1992
4V4W|1|B0|U|1993
4V4W|1|B0|C|1994

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AU

Transfer RNA; tRNA

Chain BB

50S ribosomal protein L3

Chain BI

50S ribosomal protein L14