Loop J5_4V4W

3D structure

PDB id: 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å

Loop

Sequence: ACGGAAAGACCCCGUGAA*UACUCCGGGGAUAACAGGCUGAUA*UGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUG*CAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAG*CGGUCCCUAU
Length: 136 nucleotides
Bulged bases: 4V4W|1|B0|C|2055, 4V4W|1|B0|A|2059, 4V4W|1|B0|A|2060, 4V4W|1|B0|U|2068, 4V4W|1|B0|A|2439, 4V4W|1|B0|G|2447, 4V4W|1|B0|A|2448, 4V4W|1|B0|U|2491, 4V4W|1|B0|A|2497, 4V4W|1|B0|C|2498, 4V4W|1|B0|G|2502, 4V4W|1|B0|A|2518, 4V4W|1|B0|A|2547, 4V4W|1|B0|U|2548, 4V4W|1|B0|G|2557, 4V4W|1|B0|C|2573, 4V4W|1|B0|G|2576, 4V4W|1|B0|U|2609, 4V4W|1|B0|U|2613
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4W|1|B0|A|2054
4V4W|1|B0|C|2055
4V4W|1|B0|G|2056
4V4W|1|B0|G|2057
4V4W|1|B0|A|2058
4V4W|1|B0|A|2059
4V4W|1|B0|A|2060
4V4W|1|B0|G|2061
4V4W|1|B0|A|2062
4V4W|1|B0|C|2063
4V4W|1|B0|C|2064
4V4W|1|B0|C|2065
4V4W|1|B0|C|2066
4V4W|1|B0|G|2067
4V4W|1|B0|U|2068
4V4W|1|B0|G|2069
4V4W|1|B0|A|2070
4V4W|1|B0|A|2071
*
4V4W|1|B0|U|2438
4V4W|1|B0|A|2439
4V4W|1|B0|C|2440
4V4W|1|B0|U|2441
4V4W|1|B0|C|2442
4V4W|1|B0|C|2443
4V4W|1|B0|G|2444
4V4W|1|B0|G|2445
4V4W|1|B0|G|2446
4V4W|1|B0|G|2447
4V4W|1|B0|A|2448
4V4W|1|B0|U|2449
4V4W|1|B0|A|2450
4V4W|1|B0|A|2451
4V4W|1|B0|C|2452
4V4W|1|B0|A|2453
4V4W|1|B0|G|2454
4V4W|1|B0|G|2455
4V4W|1|B0|C|2456
4V4W|1|B0|U|2457
4V4W|1|B0|G|2458
4V4W|1|B0|A|2459
4V4W|1|B0|U|2460
4V4W|1|B0|A|2461
*
4V4W|1|B0|U|2489
4V4W|1|B0|G|2490
4V4W|1|B0|U|2491
4V4W|1|B0|U|2492
4V4W|1|B0|U|2493
4V4W|1|B0|G|2494
4V4W|1|B0|G|2495
4V4W|1|B0|C|2496
4V4W|1|B0|A|2497
4V4W|1|B0|C|2498
4V4W|1|B0|C|2499
4V4W|1|B0|U|2500
4V4W|1|B0|C|2501
4V4W|1|B0|G|2502
4V4W|1|B0|A|2503
4V4W|1|B0|U|2504
4V4W|1|B0|G|2505
4V4W|1|B0|U|2506
4V4W|1|B0|C|2507
4V4W|1|B0|G|2508
4V4W|1|B0|G|2509
4V4W|1|B0|C|2510
4V4W|1|B0|U|2511
4V4W|1|B0|C|2512
4V4W|1|B0|A|2513
4V4W|1|B0|U|2514
4V4W|1|B0|C|2515
4V4W|1|B0|A|2516
4V4W|1|B0|C|2517
4V4W|1|B0|A|2518
4V4W|1|B0|U|2519
4V4W|1|B0|C|2520
4V4W|1|B0|C|2521
4V4W|1|B0|U|2522
4V4W|1|B0|G|2523
*
4V4W|1|B0|C|2540
4V4W|1|B0|A|2541
4V4W|1|B0|A|2542
4V4W|1|B0|G|2543
4V4W|1|B0|G|2544
4V4W|1|B0|G|2545
4V4W|1|B0|U|2546
4V4W|1|B0|A|2547
4V4W|1|B0|U|2548
4V4W|1|B0|G|2549
4V4W|1|B0|G|2550
4V4W|1|B0|C|2551
4V4W|1|B0|U|2552
4V4W|1|B0|G|2553
4V4W|1|B0|U|2554
4V4W|1|B0|U|2555
4V4W|1|B0|C|2556
4V4W|1|B0|G|2557
4V4W|1|B0|C|2558
4V4W|1|B0|C|2559
4V4W|1|B0|A|2560
4V4W|1|B0|U|2561
4V4W|1|B0|U|2562
4V4W|1|B0|U|2563
4V4W|1|B0|A|2564
4V4W|1|B0|A|2565
4V4W|1|B0|A|2566
4V4W|1|B0|G|2567
4V4W|1|B0|U|2568
4V4W|1|B0|G|2569
4V4W|1|B0|G|2570
4V4W|1|B0|U|2571
4V4W|1|B0|A|2572
4V4W|1|B0|C|2573
4V4W|1|B0|G|2574
4V4W|1|B0|C|2575
4V4W|1|B0|G|2576
4V4W|1|B0|A|2577
4V4W|1|B0|G|2578
4V4W|1|B0|C|2579
4V4W|1|B0|U|2580
4V4W|1|B0|G|2581
4V4W|1|B0|G|2582
4V4W|1|B0|G|2583
4V4W|1|B0|U|2584
4V4W|1|B0|U|2585
4V4W|1|B0|U|2586
4V4W|1|B0|A|2587
4V4W|1|B0|G|2588
*
4V4W|1|B0|C|2606
4V4W|1|B0|G|2607
4V4W|1|B0|G|2608
4V4W|1|B0|U|2609
4V4W|1|B0|C|2610
4V4W|1|B0|C|2611
4V4W|1|B0|C|2612
4V4W|1|B0|U|2613
4V4W|1|B0|A|2614
4V4W|1|B0|U|2615

Current chains

Chain B0: 23S ribosomal RNA

Nearby chains

Chain AU: Transfer RNA; tRNA
Chain AV: Transfer RNA; tRNA
Chain BB: 50S ribosomal protein L3
Chain BC: 50S ribosomal protein L4
Chain BE: 50S ribosomal protein L6
Chain BI: 50S ribosomal protein L14
Chain BK: 50S ribosomal protein L16
Chain BQ: 50S ribosomal protein L22

J5_4V4W_005