J5_4V4X_001

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

4V4X|1|AA|G|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4X_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1595

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V4X|1|AA|C|36
4V4X|1|AA|U|37
4V4X|1|AA|G|38
4V4X|1|AA|G|39
*
4V4X|1|AA|C|403
4V4X|1|AA|U|404
4V4X|1|AA|U|405
4V4X|1|AA|G|406
*
4V4X|1|AA|C|436
4V4X|1|AA|U|437
4V4X|1|AA|G|438
4V4X|1|AA|A|439
4V4X|1|AA|A|440
4V4X|1|AA|C|442
*
4V4X|1|AA|G|492
4V4X|1|AA|G|493
4V4X|1|AA|U|494
4V4X|1|AA|A|495
4V4X|1|AA|A|496
4V4X|1|AA|U|497
4V4X|1|AA|A|498
4V4X|1|AA|G|500
*
4V4X|1|AA|C|545
4V4X|1|AA|G|546
4V4X|1|AA|A|547
4V4X|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AO

30S ribosomal protein S12