J5_4V5A_012

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACUC*GGAC*GUUCU*AGCGU*AGUGCGAAUG

Length

30 nucleotides

Bulged bases

4V5A|1|DA|G|1248, 4V5A|1|DA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5A|1|DA|C|584
4V5A|1|DA|G|585
4V5A|1|DA|A|586
4V5A|1|DA|C|587
4V5A|1|DA|U|588
4V5A|1|DA|C|589
*
4V5A|1|DA|G|668
4V5A|1|DA|G|669
4V5A|1|DA|A|670
4V5A|1|DA|C|671
*
4V5A|1|DA|G|809
4V5A|1|DA|U|810
4V5A|1|DA|U|811
4V5A|1|DA|C|812
4V5A|1|DA|U|813
*
4V5A|1|DA|A|1194
4V5A|1|DA|G|1195
4V5A|1|DA|C|1196
4V5A|1|DA|G|1197
4V5A|1|DA|U|1198
*
4V5A|1|DA|A|1247
4V5A|1|DA|G|1248
4V5A|1|DA|U|1249
4V5A|1|DA|G|1250
4V5A|1|DA|C|1251
4V5A|1|DA|G|1252
4V5A|1|DA|A|1253
4V5A|1|DA|A|1254
4V5A|1|DA|U|1255
4V5A|1|DA|G|1256

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15

Chain DU

50S RIBOSOMAL PROTEIN L20

Chain DV

50S RIBOSOMAL PROTEIN L21