J5_4V5B_001

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CAGUGUGU*ACACACUAU*AGG

Length

34 nucleotides

Bulged bases

4V5B|1|AB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|AB|C|47
4V5B|1|AB|G|48
4V5B|1|AB|A|49
4V5B|1|AB|U|50
4V5B|1|AB|G|51
4V5B|1|AB|A|52
4V5B|1|AB|A|53
4V5B|1|AB|G|54
*
4V5B|1|AB|C|116
4V5B|1|AB|G|117
4V5B|1|AB|A|118
4V5B|1|AB|A|119
4V5B|1|AB|U|120
4V5B|1|AB|G|121
*
4V5B|1|AB|C|130
4V5B|1|AB|A|131
4V5B|1|AB|G|132
4V5B|1|AB|U|133
4V5B|1|AB|G|134
4V5B|1|AB|U|135
4V5B|1|AB|G|136
4V5B|1|AB|U|137
*
4V5B|1|AB|A|142
4V5B|1|AB|C|143
4V5B|1|AB|A|144
4V5B|1|AB|C|145
4V5B|1|AB|A|146
4V5B|1|AB|C|147
4V5B|1|AB|U|148
4V5B|1|AB|A|149
4V5B|1|AB|U|150
*
4V5B|1|AB|A|176
4V5B|1|AB|G|177
4V5B|1|AB|G|178

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A2

50S RIBOSOMAL PROTEIN L34

Chain AT

50S RIBOSOMAL PROTEIN L23