Loop J5_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: CGACUUAU*AUAGACCCGAAAC*GAGAUAGCUGGUUC*GC*GCGAAUG
Length: 44 nucleotides
Bulged bases: 4V5B|1|AB|G|805, 4V5B|1|AB|U|811, 4V5B|1|AB|U|1255
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|AB|C|584
4V5B|1|AB|G|585
4V5B|1|AB|A|586
4V5B|1|AB|C|587
4V5B|1|AB|U|588
4V5B|1|AB|U|589
4V5B|1|AB|A|590
4V5B|1|AB|U|591
*
4V5B|1|AB|A|666
4V5B|1|AB|U|667
4V5B|1|AB|A|668
4V5B|1|AB|G|669
4V5B|1|AB|A|670
4V5B|1|AB|C|671
4V5B|1|AB|C|672
4V5B|1|AB|C|673
4V5B|1|AB|G|674
4V5B|1|AB|A|675
4V5B|1|AB|A|676
4V5B|1|AB|A|677
4V5B|1|AB|C|678
*
4V5B|1|AB|G|799
4V5B|1|AB|A|800
4V5B|1|AB|G|801
4V5B|1|AB|A|802
4V5B|1|AB|U|803
4V5B|1|AB|A|804
4V5B|1|AB|G|805
4V5B|1|AB|C|806
4V5B|1|AB|U|807
4V5B|1|AB|G|808
4V5B|1|AB|G|809
4V5B|1|AB|U|810
4V5B|1|AB|U|811
4V5B|1|AB|C|812
*
4V5B|1|AB|G|1195
4V5B|1|AB|C|1196
*
4V5B|1|AB|G|1250
4V5B|1|AB|C|1251
4V5B|1|AB|G|1252
4V5B|1|AB|A|1253
4V5B|1|AB|A|1254
4V5B|1|AB|U|1255
4V5B|1|AB|G|1256

Current chains

Chain AB: 23S RIBOSOMAL RNA

Nearby chains

Chain A3: 50S RIBOSOMAL PROTEIN L35
Chain AE: 50S RIBOSOMAL PROTEIN L4
Chain AL: 50S RIBOSOMAL PROTEIN L15
Chain AQ: 50S RIBOSOMAL PROTEIN L20
Chain AR: 50S RIBOSOMAL PROTEIN L21

J5_4V5B_002