Loop J5_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: GAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUUAG*CGGUCC
Length: 43 nucleotides
Bulged bases: 4V5B|1|AB|A|2448, 4V5B|1|AB|U|2585, 4V5B|1|AB|U|2609
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|AB|G|2057
4V5B|1|AB|A|2058
4V5B|1|AB|A|2059
4V5B|1|AB|A|2060
4V5B|1|AB|G|2061
4V5B|1|AB|A|2062
4V5B|1|AB|C|2063
4V5B|1|AB|C|2064
*
4V5B|1|AB|G|2446
4V5B|1|AB|G|2447
4V5B|1|AB|A|2448
4V5B|1|AB|U|2449
4V5B|1|AB|A|2450
4V5B|1|AB|A|2451
4V5B|1|AB|C|2452
4V5B|1|AB|A|2453
4V5B|1|AB|G|2454
4V5B|1|AB|G|2455
*
4V5B|1|AB|C|2496
4V5B|1|AB|A|2497
4V5B|1|AB|C|2498
4V5B|1|AB|C|2499
4V5B|1|AB|U|2500
4V5B|1|AB|C|2501
4V5B|1|AB|G|2502
4V5B|1|AB|A|2503
4V5B|1|AB|U|2504
4V5B|1|AB|G|2505
4V5B|1|AB|U|2506
4V5B|1|AB|C|2507
*
4V5B|1|AB|G|2582
4V5B|1|AB|G|2583
4V5B|1|AB|U|2584
4V5B|1|AB|U|2585
4V5B|1|AB|U|2586
4V5B|1|AB|A|2587
4V5B|1|AB|G|2588
*
4V5B|1|AB|C|2606
4V5B|1|AB|G|2607
4V5B|1|AB|G|2608
4V5B|1|AB|U|2609
4V5B|1|AB|C|2610
4V5B|1|AB|C|2611

Current chains

Chain AB: 23S RIBOSOMAL RNA

Nearby chains

Chain A0: 50S RIBOSOMAL PROTEIN L32
Chain AC: 50S RIBOSOMAL PROTEIN L2
Chain AD: 50S RIBOSOMAL PROTEIN L3
Chain AE: 50S RIBOSOMAL PROTEIN L4
Chain AM: 50S RIBOSOMAL PROTEIN L16
Chain AS: 50S RIBOSOMAL PROTEIN L22

J5_4V5B_003