J5_4V5B_004

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGG*CGUGUAUGAAGAAG*UGUAAAGUACUUUC*GAAG*CAAG

Length

40 nucleotides

Bulged bases

4V5B|1|BA|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5B|1|BA|C|36
4V5B|1|BA|U|37
4V5B|1|BA|G|38
4V5B|1|BA|G|39
*
4V5B|1|BA|C|403
4V5B|1|BA|G|404
4V5B|1|BA|U|405
4V5B|1|BA|G|406
4V5B|1|BA|U|407
4V5B|1|BA|A|408
4V5B|1|BA|U|409
4V5B|1|BA|G|410
4V5B|1|BA|A|411
4V5B|1|BA|A|412
4V5B|1|BA|G|413
4V5B|1|BA|A|414
4V5B|1|BA|A|415
4V5B|1|BA|G|416
*
4V5B|1|BA|U|427
4V5B|1|BA|G|428
4V5B|1|BA|U|429
4V5B|1|BA|A|430
4V5B|1|BA|A|431
4V5B|1|BA|A|432
4V5B|1|BA|G|433
4V5B|1|BA|U|434
4V5B|1|BA|A|435
4V5B|1|BA|C|436
4V5B|1|BA|U|437
4V5B|1|BA|U|438
4V5B|1|BA|U|439
4V5B|1|BA|C|440
*
4V5B|1|BA|G|497
4V5B|1|BA|A|498
4V5B|1|BA|A|499
4V5B|1|BA|G|500
*
4V5B|1|BA|C|545
4V5B|1|BA|A|546
4V5B|1|BA|A|547
4V5B|1|BA|G|548

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BD

30S RIBOSOMAL PROTEIN S4

Chain BL

30S RIBOSOMAL PROTEIN S12