J5_4V5B_006
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CAGU*GCGUACCU*AUGGG*CAUAAGUAA*UGAAAUUG
- Length
- 34 nucleotides
- Bulged bases
- 4V5B|1|CB|A|532, 4V5B|1|CB|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|CB|C|531
4V5B|1|CB|A|532
4V5B|1|CB|G|533
4V5B|1|CB|U|534
*
4V5B|1|CB|G|559
4V5B|1|CB|C|560
4V5B|1|CB|G|561
4V5B|1|CB|U|562
4V5B|1|CB|A|563
4V5B|1|CB|C|564
4V5B|1|CB|C|565
4V5B|1|CB|U|566
*
4V5B|1|CB|A|575
4V5B|1|CB|U|576
4V5B|1|CB|G|577
4V5B|1|CB|G|578
4V5B|1|CB|G|579
*
4V5B|1|CB|C|1261
4V5B|1|CB|A|1262
4V5B|1|CB|U|1263
4V5B|1|CB|A|1264
4V5B|1|CB|A|1265
4V5B|1|CB|G|1266
4V5B|1|CB|U|1267
4V5B|1|CB|A|1268
4V5B|1|CB|A|1269
*
4V5B|1|CB|U|2011
4V5B|1|CB|G|2012
4V5B|1|CB|A|2013
4V5B|1|CB|A|2014
4V5B|1|CB|A|2015
4V5B|1|CB|U|2016
4V5B|1|CB|U|2017
4V5B|1|CB|G|2018
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C0
- 50S RIBOSOMAL PROTEIN L32
- Chain CE
- 50S RIBOSOMAL PROTEIN L4
- Chain CJ
- 50S RIBOSOMAL PROTEIN L13
- Chain CL
- 50S RIBOSOMAL PROTEIN L15
- Chain CQ
- 50S RIBOSOMAL PROTEIN L20
- Chain CR
- 50S RIBOSOMAL PROTEIN L21
- Chain CS
- 50S RIBOSOMAL PROTEIN L22
Coloring options: