J5_4V5B_009

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

4V5B|1|DA|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5B_009 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1504

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V5B|1|DA|C|36
4V5B|1|DA|U|37
4V5B|1|DA|G|38
4V5B|1|DA|G|39
*
4V5B|1|DA|C|403
4V5B|1|DA|G|404
4V5B|1|DA|U|405
4V5B|1|DA|G|406
*
4V5B|1|DA|C|436
4V5B|1|DA|U|437
4V5B|1|DA|U|438
4V5B|1|DA|U|439
4V5B|1|DA|C|440
*
4V5B|1|DA|G|497
4V5B|1|DA|A|498
4V5B|1|DA|A|499
4V5B|1|DA|G|500
*
4V5B|1|DA|C|545
4V5B|1|DA|A|546
4V5B|1|DA|A|547
4V5B|1|DA|G|548

Current chains

Chain DA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain DD

30S RIBOSOMAL PROTEIN S4

Chain DL

30S RIBOSOMAL PROTEIN S12