Loop J5_4V5B

3D structure

PDB id: 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of PDF binding helix in complex with the ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.74 Å

Loop

Sequence: CUGG*CGUG*CUUUCAGCGGGGAGGAAGG*UUGACGUUACCCGCAGAAGAAG*CAAG
Length: 53 nucleotides
Bulged bases: 4V5B|1|DA|U|439, 4V5B|1|DA|U|485
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5B|1|DA|C|36
4V5B|1|DA|U|37
4V5B|1|DA|G|38
4V5B|1|DA|G|39
*
4V5B|1|DA|C|403
4V5B|1|DA|G|404
4V5B|1|DA|U|405
4V5B|1|DA|G|406
*
4V5B|1|DA|C|436
4V5B|1|DA|U|437
4V5B|1|DA|U|438
4V5B|1|DA|U|439
4V5B|1|DA|C|440
4V5B|1|DA|A|441
4V5B|1|DA|G|442
4V5B|1|DA|C|443
4V5B|1|DA|G|444
4V5B|1|DA|G|445
4V5B|1|DA|G|446
4V5B|1|DA|G|447
4V5B|1|DA|A|448
4V5B|1|DA|G|449
4V5B|1|DA|G|450
4V5B|1|DA|A|451
4V5B|1|DA|A|452
4V5B|1|DA|G|453
4V5B|1|DA|G|454
*
4V5B|1|DA|U|479
4V5B|1|DA|U|480
4V5B|1|DA|G|481
4V5B|1|DA|A|482
4V5B|1|DA|C|483
4V5B|1|DA|G|484
4V5B|1|DA|U|485
4V5B|1|DA|U|486
4V5B|1|DA|A|487
4V5B|1|DA|C|488
4V5B|1|DA|C|489
4V5B|1|DA|C|490
4V5B|1|DA|G|491
4V5B|1|DA|C|492
4V5B|1|DA|A|493
4V5B|1|DA|G|494
4V5B|1|DA|A|495
4V5B|1|DA|A|496
4V5B|1|DA|G|497
4V5B|1|DA|A|498
4V5B|1|DA|A|499
4V5B|1|DA|G|500
*
4V5B|1|DA|C|545
4V5B|1|DA|A|546
4V5B|1|DA|A|547
4V5B|1|DA|G|548

Current chains

Chain DA: 16S RIBOSOMAL RNA

Nearby chains

Chain AB: Large subunit ribosomal RNA; LSU rRNA
Chain AH: 50S RIBOSOMAL PROTEIN L9
Chain DD: 30S RIBOSOMAL PROTEIN S4
Chain DL: 30S RIBOSOMAL PROTEIN S12
Chain DP: 30S RIBOSOMAL PROTEIN S16

J5_4V5B_010