J5_4V5B_015
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- CGACUU*AGACCCGAAAC*GAGAUAGCUGGUUC*GC*GCGAAUG
- Length
- 40 nucleotides
- Bulged bases
- 4V5B|1|CB|G|805, 4V5B|1|CB|U|811, 4V5B|1|CB|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5B|1|CB|C|584
4V5B|1|CB|G|585
4V5B|1|CB|A|586
4V5B|1|CB|C|587
4V5B|1|CB|U|588
4V5B|1|CB|U|589
*
4V5B|1|CB|A|668
4V5B|1|CB|G|669
4V5B|1|CB|A|670
4V5B|1|CB|C|671
4V5B|1|CB|C|672
4V5B|1|CB|C|673
4V5B|1|CB|G|674
4V5B|1|CB|A|675
4V5B|1|CB|A|676
4V5B|1|CB|A|677
4V5B|1|CB|C|678
*
4V5B|1|CB|G|799
4V5B|1|CB|A|800
4V5B|1|CB|G|801
4V5B|1|CB|A|802
4V5B|1|CB|U|803
4V5B|1|CB|A|804
4V5B|1|CB|G|805
4V5B|1|CB|C|806
4V5B|1|CB|U|807
4V5B|1|CB|G|808
4V5B|1|CB|G|809
4V5B|1|CB|U|810
4V5B|1|CB|U|811
4V5B|1|CB|C|812
*
4V5B|1|CB|G|1195
4V5B|1|CB|C|1196
*
4V5B|1|CB|G|1250
4V5B|1|CB|C|1251
4V5B|1|CB|G|1252
4V5B|1|CB|A|1253
4V5B|1|CB|A|1254
4V5B|1|CB|U|1255
4V5B|1|CB|G|1256
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C3
- 50S RIBOSOMAL PROTEIN L35
- Chain CE
- 50S RIBOSOMAL PROTEIN L4
- Chain CL
- 50S RIBOSOMAL PROTEIN L15
- Chain CQ
- 50S RIBOSOMAL PROTEIN L20
- Chain CR
- 50S RIBOSOMAL PROTEIN L21
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