J5_4V5C_010

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5C_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0879

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5C|1|CA|C|36
4V5C|1|CA|U|37
4V5C|1|CA|G|38
4V5C|1|CA|G|39
*
4V5C|1|CA|C|403
4V5C|1|CA|U|404
4V5C|1|CA|U|405
4V5C|1|CA|G|406
*
4V5C|1|CA|C|436
4V5C|1|CA|U|437
4V5C|1|CA|G|438
4V5C|1|CA|A|439
4V5C|1|CA|A|441
4V5C|1|CA|C|442
*
4V5C|1|CA|G|492
4V5C|1|CA|G|493
4V5C|1|CA|U|494
4V5C|1|CA|A|495
4V5C|1|CA|A|496
4V5C|1|CA|U|498
4V5C|1|CA|A|499
4V5C|1|CA|G|500
*
4V5C|1|CA|C|545
4V5C|1|CA|G|546
4V5C|1|CA|A|547
4V5C|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12