J5_4V5C_011

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V5C|1|CA|A|109, 4V5C|1|CA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5C_011 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0759

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V5C|1|CA|C|58
4V5C|1|CA|A|59
4V5C|1|CA|A|60
4V5C|1|CA|G|61
*
4V5C|1|CA|C|106
4V5C|1|CA|G|107
4V5C|1|CA|G|108
4V5C|1|CA|A|109
4V5C|1|CA|C|110
4V5C|1|CA|G|111
4V5C|1|CA|G|112
4V5C|1|CA|G|113
*
4V5C|1|CA|C|314
4V5C|1|CA|A|315
4V5C|1|CA|G|316
*
4V5C|1|CA|C|337
4V5C|1|CA|A|338
4V5C|1|CA|C|339
*
4V5C|1|CA|G|350
4V5C|1|CA|G|351
4V5C|1|CA|C|352
4V5C|1|CA|A|353
4V5C|1|CA|G|354

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CT

30S RIBOSOMAL PROTEIN S20

Chain DO

50S RIBOSOMAL PROTEIN L14

Chain DT

50S RIBOSOMAL PROTEIN L19