J5_4V5D_010

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5D_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0855

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5D|1|CA|C|36
4V5D|1|CA|U|37
4V5D|1|CA|G|38
4V5D|1|CA|G|39
*
4V5D|1|CA|C|403
4V5D|1|CA|U|404
4V5D|1|CA|U|405
4V5D|1|CA|G|406
*
4V5D|1|CA|C|436
4V5D|1|CA|U|437
4V5D|1|CA|G|438
4V5D|1|CA|A|439
4V5D|1|CA|A|441
4V5D|1|CA|C|442
*
4V5D|1|CA|G|492
4V5D|1|CA|G|493
4V5D|1|CA|U|494
4V5D|1|CA|A|495
4V5D|1|CA|A|496
4V5D|1|CA|U|498
4V5D|1|CA|A|499
4V5D|1|CA|G|500
*
4V5D|1|CA|C|545
4V5D|1|CA|G|546
4V5D|1|CA|A|547
4V5D|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BI

50S RIBOSOMAL PROTEIN L9

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12