J5_4V5E_003

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V5E|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5E_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.062

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V5E|1|BA|C|47
4V5E|1|BA|G|48
4V5E|1|BA|A|49
4V5E|1|BA|U|50
4V5E|1|BA|G|51
4V5E|1|BA|A|52
4V5E|1|BA|A|53
4V5E|1|BA|G|54
*
4V5E|1|BA|C|116
4V5E|1|BA|G|117
4V5E|1|BA|A|118
4V5E|1|BA|A|119
4V5E|1|BA|U|120
4V5E|1|BA|G|121
*
4V5E|1|BA|C|130
4V5E|1|BA|G|131
*
4V5E|1|BA|C|148
4V5E|1|BA|A|149
4V5E|1|BA|C|150
*
4V5E|1|BA|G|176
4V5E|1|BA|G|177
4V5E|1|BA|G|178

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BX

50S RIBOSOMAL PROTEIN L23