J5_4V5E_021
3D structure
- PDB id
- 4V5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Insights into translational termination from the structure of RF2 bound to the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V5E_021 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0985
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V5E|1|AA|C|36
4V5E|1|AA|U|37
4V5E|1|AA|G|38
4V5E|1|AA|G|39
*
4V5E|1|AA|C|403
4V5E|1|AA|U|404
4V5E|1|AA|U|405
4V5E|1|AA|G|406
*
4V5E|1|AA|C|436
4V5E|1|AA|U|437
4V5E|1|AA|G|438
4V5E|1|AA|A|439
4V5E|1|AA|A|441
4V5E|1|AA|C|442
*
4V5E|1|AA|G|492
4V5E|1|AA|G|493
4V5E|1|AA|U|494
4V5E|1|AA|A|495
4V5E|1|AA|A|496
4V5E|1|AA|U|498
4V5E|1|AA|A|499
4V5E|1|AA|G|500
*
4V5E|1|AA|C|545
4V5E|1|AA|G|546
4V5E|1|AA|A|547
4V5E|1|AA|G|548
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 30S RIBOSOMAL PROTEIN S4
- Chain AL
- 30S RIBOSOMAL PROTEIN S12
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DI
- 50S RIBOSOMAL PROTEIN L9
Coloring options: