J5_4V5H_002

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5H_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1065

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V5H|1|AA|C|36
4V5H|1|AA|U|37
4V5H|1|AA|G|38
4V5H|1|AA|G|39
*
4V5H|1|AA|C|403
4V5H|1|AA|G|404
4V5H|1|AA|U|405
4V5H|1|AA|G|406
*
4V5H|1|AA|C|436
4V5H|1|AA|U|437
4V5H|1|AA|U|438
4V5H|1|AA|U|439
4V5H|1|AA|C|440
4V5H|1|AA|A|441
4V5H|1|AA|G|442
*
4V5H|1|AA|C|492
4V5H|1|AA|A|493
4V5H|1|AA|G|494
4V5H|1|AA|A|495
4V5H|1|AA|A|496
4V5H|1|AA|G|497
4V5H|1|AA|A|498
4V5H|1|AA|A|499
4V5H|1|AA|G|500
*
4V5H|1|AA|C|545
4V5H|1|AA|A|546
4V5H|1|AA|A|547
4V5H|1|AA|G|548

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4

Chain AL

30S RIBOSOMAL PROTEIN S12