J5_4V5H_004

3D structure

PDB id

4V5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V5H|1|BB|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5H_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1073

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V5H|1|BB|C|47
4V5H|1|BB|G|48
4V5H|1|BB|A|49
4V5H|1|BB|U|50
4V5H|1|BB|G|51
4V5H|1|BB|A|52
4V5H|1|BB|A|53
4V5H|1|BB|G|54
*
4V5H|1|BB|C|116
4V5H|1|BB|G|117
4V5H|1|BB|A|118
4V5H|1|BB|A|119
4V5H|1|BB|U|120
4V5H|1|BB|G|121
*
4V5H|1|BB|C|130
4V5H|1|BB|A|131
*
4V5H|1|BB|U|148
4V5H|1|BB|A|149
4V5H|1|BB|U|150
*
4V5H|1|BB|A|176
4V5H|1|BB|G|177
4V5H|1|BB|G|178

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BT

50S RIBOSOMAL PROTEIN L23